agat_sp_Prokka_inferNameFromAttributes.pl

DESCRIPTION

The script aims to fill a Name attribute based on <gene> attribute in a prokka gff annotation file. If no gene attribute is present it take if from the <inference> attribute.

SYNOPSIS

agat_sp_Prokka_inferNameFromAttributes.pl -gff file.gff  [ -o outfile ]
agat_sp_Prokka_inferNameFromAttributes.pl --help

OPTIONS

• --gff or -f

  Input GTF/GFF file.

• --force

  If Name attribute already exists, they will be replaced if a new one is found

• -o , --output , --out or --outfile

  Output GFF file. If no output file is specified, the output will be written to STDOUT.

• -h or --help

  Display this helpful text.