agat_sp_Prokka_inferNameFromAttributes.pl
DESCRIPTION
The script aims to fill a Name attribute based on <gene> attribute in a prokka gff annotation file. If no gene attribute is present it take if from the <inference> attribute.
SYNOPSIS
agat_sp_Prokka_inferNameFromAttributes.pl -gff file.gff [ -o outfile ]
agat_sp_Prokka_inferNameFromAttributes.pl --help
OPTIONS
--gff or -f
Input GTF/GFF file.
--force
If Name attribute already exists, they will be replaced if a new one is found
-o , --output , --out or --outfile
Output GFF file. If no output file is specified, the output will be written to STDOUT.
-h or --help
Display this helpful text.