This script will reverse complement the annotation of all annotation from the gff that are hold by sequences described in the fasta file. The match between sequence name in the fasta file and the 1st column of the gff3 file is case sensitive.

SYNOPSIS --gff <gff_file.gff> --fasta <fasta_file.fa> [-o <output file>] --help


  • --gff, --file or --input

    STRING: Input GTF/GFF file.

  • -f, --fasta

    STRING: fasta file.

  • -v, --verbose

    BOOLEAN: For verbosity.

  • -o or --output

    STRING: Output file. If no output file is specified, the output will be written to STDOUT.

  • --help or -h

    BOOLEAN: Display this helpful text.