agat_convert_mfannot2gff.pl

DESCRIPTION

Conversion utility for MFannot "masterfile" annotation produced by the MFannot pipeline (http://megasun.bch.umontreal.ca/RNAweasel/). Reports GFF3 format.

SYNOPSIS

agat_convert_mfannot2gff.pl -m <mfannot> -o <gff>
agat_convert_mfannot2gff.pl --help

OPTIONS

  • -m or -i or --mfannot

    The mfannot input file

  • -g or -o or --gff

    the gff output file

  • -c or --config

    String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).

  • -h or --help

    Display this helpful text.