agat_sq_split.pl

DESCRIPTION

split gff3 file into several files. By default we create files containing 1000 genes and all sub-features associated. GFF3 input file must be sequential.

SYNOPSIS

agat_sq_split.pl --input <input file> -o <output file>
agat_sq_split.pl --help

OPTIONS

  • --gff, --file or --input

    STRING: Input GTF/GFF file.

  • -i or --interval Integer. Number of group of feature to include in each file. 1000 by default.

  • --ft or --feature_type The top feature of the feature group. By default "gene".

  • -o or --output

    STRING: Output file. If no output file is specified, the output will be written to STDOUT. The result is in tabulate format.

  • --help or -h

    Display this helpful text.