agat_sp_add_introns.pl
DESCRIPTION
The script aims to add intron features to gtf/gff file without intron features.
SYNOPSIS
agat_sp_add_introns.pl --gff infile --out outFile
agat_sp_add_introns.pl --help
OPTIONS
--gff, -f, --ref or -reffile
Input GTF/GFF file.
--out, --output or -o
Output GFF3 file.
-c or --config
String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
--help or -h
Display this helpful text.