agat_convert_sp_gff2tsv.pl
DESCRIPTION
The script aims to convert gtf/gff file into tabulated file. Attribute's tags from the 9th column become column titles.
SYNOPSIS
agat_convert_sp_gff2tsv.pl -gff file.gff [ -o outfile ]
agat_convert_sp_gff2tsv.pl --help
OPTIONS
--gff or -f
Input GTF/GFF file.
-o , --output , --out or --outfile
Output GFF file. If no output file is specified, the output will be written to STDOUT.
-c or --config
String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
-h or --help
Display this helpful text.