agat_sp_webApollo_compliant.pl

DESCRIPTION

This script aim to remove useless/problematic information for webapollo, change some featuree type to avoid problem whem loading them into webapollo, and optimize some attribute for a nice displaying.

SYNOPSIS

agat_sp_webApollo_compliant.pl -g infile.gff [ -o outfile ]
agat_sp_webApollo_compliant.pl --help

OPTIONS

• -g, --gff or -ref

  Input GTF/GFF file.

• -o or --output

  Output GFF file. If no output file is specified, the output will be written to STDOUT.

• -c or --config

  String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).

• -h or --help

  Display this helpful text.