agat_converter_embl2gff.pl

DESCRIPTION

The script takes an EMBL file as input, and will translate it in gff format.

SYNOPSIS

agat_converter_embl2gff.pl --embl infile.embl [ -o outfile ]

OPTIONS

• --embl

  Input EMBL file that will be read

• --primary_tag, --pt, -t

  List of "primary tag". Useful to discard or keep specific features. Multiple tags must be coma-separated.

• -d

  Means that primary tags provided by the option "primary_tag" will be discarded.

• -o, --output, --out, --outfile or --gff

  Output GFF file. If no output file is specified, the output will be written to STDOUT.

• -h or --help

  Display this helpful text.