agat_sp_fix_features_locations_duplicated.pl

DESCRIPTION

The script aims to fix/remove feature with duplicated locations. Even if it not an error by itself in a gtf/gff file, it becomes problematic when submitting the file to ena (after convertion).

SYNOPSIS

agat_sp_fix_features_locations_duplicated.pl --gff infile  [-o outfile]
agat_sp_fix_features_locations_duplicated.pl --help

OPTIONS

• -f, --file, --gff3 or --gff

  Input GTF/GFF file.

• -o, --out, --output or --outfile

  Output file. If none given, will be display in standard output.

• --help or -h

  Display this helpful text.