agat_sq_split.pl¶
DESCRIPTION¶
split gff3 file into several files. By default we create files containing 1000 genes and all sub-features associated. GFF3 input file must be sequential.
SYNOPSIS¶
agat_sq_split.pl -i <input file> -o <output file>
agat_sq_split.pl --help
OPTIONS¶
--gff, --file or --input
STRING: Input GTF/GFF file.
-i or --interval Integer. Number of group of feature to include in each file. 1000 by default.
--ft or --feature_type The top feature of the feature group. By default "gene".
-o or --output
STRING: Output file. If no output file is specified, the output will be written to STDOUT. The result is in tabulate format.
--help or -h
Display this helpful text.