agat_sq_manage_ID.pl¶
DESCRIPTION¶
The script changes IDs to give uniq one and reflect the change in Parent attribute of impacted features.
SYNOPSIS¶
agat_sq_manage_ID.pl --gff <input file> [-o <output file>]
agat_sq_manage_ID.pl --help
OPTIONS¶
--gff, --file or --input
STRING: Input GTF/GFF file.
--of
Output format, if no ouput format is given, the same as the input one detected will be used. Otherwise you can force to have a gff version 1 or 2 or 3 by giving the corresponding number.
-o or --output
STRING: Output file. If no output file is specified, the output will be written to STDOUT. The result is in tabulate format.
--help or -h
Display this helpful text.