agat_sp_fix_cds_frame.pl¶
DESCRIPTION¶
This script aims to fix the cds phases.
SYNOPSIS¶
agat_sp_fix_cds_frame.pl --gff infile.gff -f fasta [ -o outfile ]
agat_sp_fix_cds_frame.pl --help
OPTIONS¶
-g, --gff or -ref
Input GTF/GFF file.
-fa or --fasta
Input fasta file.
-v or --verbose
Add verbosity.
-o or --output
Output GFF file. If no output file is specified, the output will be written to STDOUT.
-h or --help
Display this helpful text.