agat_sp_fix_cds_frame.pl

DESCRIPTION

This script aims to fix the cds phases.

SYNOPSIS

agat_sp_fix_cds_frame.pl --gff infile.gff -f fasta [ -o outfile ]
agat_sp_fix_cds_frame.pl --help

OPTIONS

  • -g, --gff or -ref

    Input GTF/GFF file.

  • -fa or --fasta

    Input fasta file.

  • -v or --verbose

    Add verbosity.

  • -o or --output

    Output GFF file. If no output file is specified, the output will be written to STDOUT.

  • -h or --help

    Display this helpful text.