agat_sp_merge_annotations.pl¶
DESCRIPTION¶
This script merge different gff annotation files in one. It uses the Omniscient parser that takes care of duplicated names and fixes other oddities met in those files.
SYNOPSIS¶
agat_sp_merge_annotations.pl --gff infile1 --gff infile2 --out outFile
agat_sp_merge_annotations.pl --help
OPTIONS¶
--gff or -f
Input GTF/GFF file(s). You can specify as much file you want like so: -f file1 -f file2 -f file3
--out, --output or -o
Output gff3 file where the gene incriminated will be write.
--help or -h
Display this helpful text.