agat_sp_merge_annotations.pl

DESCRIPTION

This script merge different gff annotation files in one. It uses the Omniscient parser that takes care of duplicated names and fixes other oddities met in those files.

SYNOPSIS

agat_sp_merge_annotations.pl --gff infile1 --gff infile2 --out outFile
agat_sp_merge_annotations.pl --help

OPTIONS

• --gff or -f

  Input GTF/GFF file(s). You can specify as much file you want like so: -f file1 -f file2 -f file3

• --out, --output or -o

  Output gff3 file where the gene incriminated will be write.

• --help or -h

  Display this helpful text.